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  4. one zero frequency mode is missing

one zero frequency mode is missing

Scheduled Pinned Locked Moved Vibrational Spectroscopies: IR, Raman, INS
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  • job314undefined Offline
    job314undefined Offline
    job314
    wrote last edited by dmitoli
    #1

    I am used to seeing 3 zero frequency modes in the crystal frequency calculation output. This urea crystal calculation has only two - I was wondering why and can I use this outcome for thermodynamics calculations with this missing mode

    MODES         EIGV          FREQUENCIES     IRREP  IR   INTENS    RAMAN
                 (HARTREE**2)   (CM**-1)     (THZ)             (KM/MOL)
        1-   2   -0.1181E-19      0.0000    0.0000  (E  )   A (     0.00)   A
        3-   3    0.2094E-19      0.0000    0.0000  (B2 )   A (     0.00)   A
        4-   4    0.1254E-06     77.7189    2.3300  (B1 )   I (     0.00)   A
        5-   5    0.2460E-06    108.8462    3.2631  (A2 )   I (     0.00)   I
        6-   7    0.3349E-06    127.0111    3.8077  (E  )   A (     0.00)   A
        8-   8    0.4355E-06    144.8406    4.3422  (A1 )   I (     0.00)   A
        9-  10    0.6407E-06    175.6769    5.2667  (E  )   A (     0.00)   A
       11-  12    0.1108E-05    230.9837    6.9247  (E  )   A (     0.00)   A
       13-  13    0.4844E-05    483.0526   14.4816  (B1 )   I (     0.00)   A
       14-  14    0.6693E-05    567.8172   17.0227  (A1 )   I (     0.00)   A
       15-  16    0.6926E-05    577.5886   17.3157  (E  )   A (     0.00)   A
       17-  17    0.7310E-05    593.3990   17.7897  (B2 )   A (     0.00)   A
       18-  19    0.7970E-05    619.6054   18.5753  (E  )   A (     0.00)   A
       20-  20    0.8638E-05    645.0548   19.3383  (A2 )   I (     0.00)   I
       21-  21    0.1067E-04    717.0169   21.4956  (B1 )   I (     0.00)   A
       22-  22    0.1286E-04    787.0371   23.5948  (A2 )   I (     0.00)   I
       23-  24    0.1322E-04    798.0946   23.9263  (E  )   A (     0.00)   A
       25-  26    0.1420E-04    826.9504   24.7914  (E  )   A (     0.00)   A
       27-  27    0.2232E-04   1036.9495   31.0870  (B2 )   A (     0.00)   A
       28-  28    0.2251E-04   1041.3084   31.2176  (A1 )   I (     0.00)   A
       29-  30    0.2535E-04   1105.1276   33.1309  (E  )   A (     0.00)   A
       31-  31    0.2780E-04   1157.1639   34.6909  (B2 )   A (     0.00)   A
       32-  32    0.3003E-04   1202.7304   36.0569  (A1 )   I (     0.00)   A
       33-  34    0.4803E-04   1521.0625   45.6003  (E  )   A (     0.00)   A
       35-  35    0.4892E-04   1535.0190   46.0187  (A1 )   I (     0.00)   A
       36-  36    0.5334E-04   1602.8976   48.0537  (B2 )   A (     0.00)   A
       37-  38    0.5717E-04   1659.4784   49.7499  (E  )   A (     0.00)   A
       39-  39    0.5840E-04   1677.2645   50.2831  (A1 )   I (     0.00)   A
       40-  40    0.6098E-04   1713.8726   51.3806  (B2 )   A (     0.00)   A
       41-  42    0.2380E-03   3386.0936  101.5125  (E  )   A (     0.00)   A
       43-  43    0.2424E-03   3416.7391  102.4313  (A1 )   I (     0.00)   A
       44-  44    0.2438E-03   3426.7219  102.7305  (B2 )   A (     0.00)   A
       45-  46    0.2612E-03   3547.0252  106.3371  (E  )   A (     0.00)   A
       47-  47    0.2614E-03   3548.4246  106.3791  (A1 )   I (     0.00)   A
       48-  48    0.2657E-03   3577.3918  107.2475  (B2 )   A (     0.00)   A
    

    urea.out

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    • dmitoliundefined Offline
      dmitoliundefined Offline
      dmitoli Developer
      wrote last edited by
      #2

      Dear Jonas,

      What you are seeing in your output is actually consistent with having three zero-frequency acoustic modes. The first entry of the table (modes 1-2) has irrep E, which is a two-dimensional irreducible representation, so it corresponds to two degenerate modes at zero frequency. The second entry (mode 3) has irrep B2, which is non-degenerate and represents the third zero-frequency mode.

      This is standard for crystals with symmetry: degeneracies can make the number of printed lines smaller than the actual number of modes.

      Hope this helps!

      Davide Mitoli, PhD
      Postdoctoral Researcher
      Department of Chemistry - University of Torino
      V. Giuria 5, 10125 Torino (Italy)
      https://github.com/davidemitoli

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      • job314undefined Offline
        job314undefined Offline
        job314
        wrote last edited by
        #3

        I see, thank you

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