ECHG in XY, XZ and XY-Z plots
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I'm working on electron density maps using CRYSPLOT and I’m trying to generate contour plots in different planes—specifically XY, XZ, and a custom diagonal like XY-Z. I’ve successfully used RECTANGU for XZ plots, but I’m not sure how to define the input for other orientations.
Here’s a simplified version of my current input:ECHG 0 50 ATOMS 1 0 0 0 2 0 0 0 2 0 0 1 RECTANGU MARGINS 3 3 3 3 END ENDHow can I modify this to get a plot in the XY and XY-Z plane and if 2 atoms are in the same cell as 0 0 0, they overlap or no? *
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Hi,
To specify your plane of interest more freely, I recommend using the COORDINA option instead of the ATOMS option. With COORDINA you can input the Cartesian coordinates of 3 points A, B and C defining the plane. For instance, if you want to select the XY plane you can simply use:
ECHG 0 50 COORDINA 1.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 RECTANGU MARGINS 3 3 3 3 END ENDHope this helps,
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Thank you, Dr. Alessandro Erba, for the helpful suggestion regarding the use of the COORDINA option. Your example for defining the XY plane was clear and easy to follow — I’ll definitely apply this approach in my setup.
Thanks again for your guidance!
Cheers