Skip to content
  • 0 Votes
    3 Posts
    196 Views

    Hello Prof. Erba,

    Thank you for providing the reference and relevant pages. This is very useful.

    Best,
    Danny

  • Basis Sets for Spin-Orbit

    Spin-Orbit Coupling and SCDFT
    7
    0 Votes
    7 Posts
    334 Views

    Thank you so much
    this helped a lot

  • 0 Votes
    3 Posts
    204 Views

    Thank you very much for the detailed explanation—this really helped clarify things for me! The plot and your explanation made it all very clear.

  • 0 Votes
    11 Posts
    467 Views

    Your response is incredibly valuable—thank you so much.I suspect that the DIIS/Anderson extrapolation might have 'hit' a local minimum, so the density guess in iteration 8 happened to yield a total energy extremely close to that of the previous step, resulting in a very small ΔE.
    CYC 0 ETOT(AU) -8.456120523718E+03 DETOT -8.46E+03 tst 0.00E+00 PX 1.00E+00
    CYC 1 ETOT(AU) -8.390242659622E+03 DETOT 6.59E+01 tst 0.00E+00 PX 1.00E+00
    CYC 2 ETOT(AU) -8.391027170997E+03 DETOT -7.85E-01 tst 3.34E-03 PX 1.13E-01
    CYC 3 ETOT(AU) -8.391734802465E+03 DETOT -7.08E-01 tst 2.44E-03 PX 1.02E-01
    CYC 4 ETOT(AU) -8.392064543836E+03 DETOT -3.30E-01 tst 8.38E-04 PX 4.49E-02
    CYC 5 ETOT(AU) -8.392086825687E+03 DETOT -2.23E-02 tst 1.24E-04 PX 1.72E-02
    CYC 6 ETOT(AU) -8.392095974656E+03 DETOT -9.15E-03 tst 2.86E-05 PX 9.66E-03
    CYC 7 ETOT(AU) -8.392097542826E+03 DETOT -1.57E-03 tst 3.85E-06 PX 4.81E-03
    CYC 8 ETOT(AU) -8.392097541980E+03 DETOT 8.46E-07 tst 5.41E-06 PX 3.18E-03
    CYC 9 ETOT(AU) -8.392098065539E+03 DETOT -5.24E-04 tst 4.69E-06 PX 3.18E-03
    While this DETOT value satisfies the default energy convergence criterion, the corresponding values suggest that the electron density had not yet fully stabilized. This aligns well with your suggestion that tightening the convergence threshold would lead to a more reliable result.
    Thank you again for your guidance.

  • Usage of the RESTART Keyword

    Geometry Optimisations
    6
    0 Votes
    6 Posts
    319 Views

    Many thanks for your detailed explanation and for checking the code — that definitely clarifies things. I really appreciate your help!

  • Error in Projected DOS Atom Indices

    Density-of-States
    3
    0 Votes
    3 Posts
    152 Views

    Oh yes, right. My apologies. I did not notice this. Thank you Giacomo!

  • COHP calculations Issue

    Moved Density-of-States
    3
    0 Votes
    3 Posts
    190 Views

    Hi,

    Can you try to re-run the COHP calculation by using:

    COHP 16 500 200 360 2 12 0

    instead of

    COHP 16 500 200 360 1 12 0

    This should generate a file COHP.DAT
    Let me know how this goes.

  • 0 Votes
    4 Posts
    214 Views

    Hi Alessandro and Giacomo,

    Thank you for the clear and helpful explanations!

    I tried running the calculation with 32 cores, and it indeed helped with memory management. I’ll continue experimenting to optimize performance. Really appreciate your guidance and the references!

  • 0 Votes
    10 Posts
    526 Views

    you're the best, thank you for going extra mile

  • 0 Votes
    3 Posts
    169 Views

    Thank you very much, that worked (but not restart)

  • Spin polarised calculation

    Moved Single-Point Calculations
    6
    0 Votes
    6 Posts
    385 Views

    Dear Eleonora and Aleks,

    Thank you so much for the detailed explanation and for sharing the corrected input/output file. That really clarified the issue. I tried your suggested settings with FMIXING and SPINLOCK adjustments, and the geometry optimization is running well with no errors. Have a nice day!

    Best,
    Aparajita

  • 0 Votes
    2 Posts
    184 Views

    Hi,

    I think that the best way to proceed in this case would be to restart the calculation one or more times. To do this, you just have to make sure that the scratch folder is not deleted when the calculation stops. Basically, you would run a first job with:

    FREQCALC END

    Then, after the first calculation stops (maybe because you reached a wall clock time limit) you would run a second job restarting from the first as:

    FREQCALC RESTART END

    In order to make this restart work, you need a few files from the previous job to be placed in the scratch folder of the new job: FREQINFO.DAT, fort.13 and fort.9 (to be renamed fort.20 in the new folder).

    If needed, you can repeat this restart process multiple times until completion of the frequency calculation.

    Hope this helps,

  • geometry optimization runs out of cycles

    Geometry Optimisations
    3
    0 Votes
    3 Posts
    212 Views

    thank you

  • 0 Votes
    5 Posts
    301 Views

    very grateful, I will run it again but not sure what to do here if it aborts again

  • Input MOF geometry problem

    Geometry Editing
    8
    0 Votes
    8 Posts
    410 Views

    GiacomoAmbrogio

    Dear Ambrogio,

    Thank you so much! the problem has been perfectly solved.

    All the best,

    wang

  • Anisotropic Shrinking Factor

    Single-Point Calculations
    3
    0 Votes
    3 Posts
    162 Views

    Hey,

    Thank you. It works now. This Forum is a great idea!

  • 3 Votes
    1 Posts
    160 Views
    No one has replied
  • 0 Votes
    2 Posts
    217 Views

    Dear Jonas,

    Thanks for reaching out and being one of the most active users of these early days of the forum. Your question gives us the chance to clarify some aspects of the output file that might not be obvious to non expert users. Below, I will refer to your output file.

    Harmonic Frequencies and IR intensities

    To compute harmonic frequencies and IR intensities (with the default approach of the Berry phase) the input looks like:

    FREQCALC INTENS ENDFREQ

    In the output file, the following table is printed:

    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIGENVALUES (EIGV) OF THE MASS WEIGHTED HESSIAN MATRIX AND HARMONIC TRANSVERSE OPTICAL (TO) FREQUENCIES. IRREP LABELS REFER TO SYMMETRY REPRESENTATION ANALYSIS; A AND I INDICATE WHETHER THE MODE IS ACTIVE OR INACTIVE, RESPECTIVELY, FOR IR AND RAMAN; INTEGRATED IR INTENSITIES IN BRACKETS. CONVERSION FACTORS FOR FREQUENCIES: 1 CM**(-1) = 0.4556335E-05 HARTREE 1 THZ = 0.3335641E+02 CM**(-1) HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MODES EIGV FREQUENCIES IRREP IR INTENS RAMAN (HARTREE**2) (CM**-1) (THZ) (KM/MOL) 1- 1 0.3488E-07 40.9894 1.2288 (A ) A ( 0.40) A 2- 2 0.6077E-07 54.1037 1.6220 (A ) A ( 0.96) A 3- 3 0.6801E-07 57.2344 1.7158 (A ) A ( 2.45) A 4- 4 0.2238E-06 103.8371 3.1130 (A ) A ( 11.47) A [...]

    For each mode (or set of degenerate modes) its eigenvalue (in Ha\(^2\)), harmonic frequency (in cm\(^{-1}\) and THz) and irreducible representation get printed. In addition, labels specifying whether the mode is IR/Raman active are also displayed (A and I indicate whether the mode is active or inactive, respectively).

    Raman intensities

    Raman intensities can be computed via a coupled-perturbed approach by inserting the INTRAMAN keyword followed by the INTCPHF block in the input deck:

    FREQCALC INTRAMAN INTCPHF END ENDFREQ

    Raman intensities are computed for each independent component of the polarizability tensor (xx, xy, xz, yy, yz, zz, labeled as "Single Crystal" in the output file) and are also averaged to mimic polycrystalline powder samples (total, parallel polarisation, perpendicular polarisation averages are printed in the output).

    POLYCRYSTALLINE ISOTROPIC INTENSITIES (ARBITRARY UNITS) MODES FREQUENCIES I_tot I_par I_perp ---------------------------------------------------------------- 1- 1 40.9894 (A ) 0.46 0.27 0.19 2- 2 54.1037 (A ) 7.35 4.23 3.12 3- 3 57.2344 (A ) 12.79 8.82 3.96 4- 4 103.8371 (A ) 13.66 7.89 5.77 SINGLE CRYSTAL DIRECTIONAL INTENSITIES (ARBITRARY UNITS) MODES FREQUENCIES I_xx I_xy I_xz I_yy I_yz I_zz ---------------------------------------------------------------------------- 1- 1 40.9894 (A ) 0.00 0.37 0.02 0.63 0.00 0.21 2- 2 54.1037 (A ) 3.17 0.69 0.00 4.35 3.66 10.05 3- 3 57.2344 (A ) 3.82 3.54 0.02 3.50 0.03 27.53 4- 4 103.8371 (A ) 2.57 1.81 0.01 16.25 3.34 19.62

    For more details on such polycrystalline averages, please refer to sections 8.4 and 8.7 of the CRYSTAL23 manual.

    Raman spectrum

    A continuous Raman spectrum can be simulated by use of the RAMSPEC block, as in:

    FREQCALC INTRAMAN INTCPHF END RAMSPEC END ENDFREQ

    The simulated spectrum is printed in an external file named RAMSPEC.DAT that contains several columns: column 1 with frequencies in cm\(^{-1}\), columns 2-4 with polycrystalline intensities (total, parallel, perpendicular), columns 5-10 with single crystal intensities (xx, xy, xz, yy, yz, zz).

    Effect of Temperature and Laser wavelength

    The effect of temperature and laser wavelength on computed Raman intensities can be accounted for by use of the RAMANEXP keyword, as in:

    FREQCALC INTRAMAN INTCPHF END RAMANEXP 298 532 RAMSPEC END ENDFREQ

    Here we set 298 K for the temperature and 532 nm for the laser wavelength. This option modifies the values of all computed Raman intensities (in the output and in the RAMSPEC.DAT file accordingly).

    Please, note that other properties (harmonic frequencies and IR intensities) are not affected by this option and thus remain unchanged in the output.

    Plots

    When CRYSPLOT reads the CRYSTAL output file it only plots the total intensity of the polycrystalline powder model.

    When CRYSPLOT reads the RAMSPEC.DAT file it plots all components:

    Screenshot 2025-03-13 at 12.47.37.png

    Other plotting tools can be used to plot specific columns of the RAMSPEC.DAT file (e.g., CRYSTALClear, gnuplot).

  • 0 Votes
    3 Posts
    177 Views

    Thank you very much Jacques and Alessandro.
    Now it works :).
    Best regards
    Xavier

  • 0 Votes
    3 Posts
    178 Views

    Hi,
    Thank you very much for your reply!

    Best regards,
    Masoud