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  • job314

    So I am getting this conducting state on a simple insulating slab and double zeta basis set. Smearing also does not work, first step show insulating behavior and the next step simply sloshes back into conducting state. LEVSHIFT also does not work. I increased tolerances - still does not work... thank you for suggestions

    Jb

    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD      TELAPSE       38.68 TCPU       27.82
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT SHELLXN     TELAPSE      210.11 TCPU      197.17
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MONMO3      TELAPSE      211.16 TCPU      198.21
    NUMERICALLY INTEGRATED DENSITY    520.0000665560
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT NUMDFT      TELAPSE      214.45 TCPU      201.47
    CYC   0 ETOT(AU) -5.433092205173E+03 DETOT -5.43E+03 tst  0.00E+00 PX  1.00E+00
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT DIIS        TELAPSE      214.55 TCPU      201.57
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FDIK        TELAPSE      223.51 TCPU      210.13
    INSULATING STATE
    TOP OF VALENCE BANDS -    BAND    260; K    4; EIG -3.6459029E-01 AU
    TOP OF VALENCE BANDS -    BAND    260; K    1; EIG -3.6561618E-01 AU
    BOTTOM OF VIRTUAL BANDS - BAND    261; K    1; EIG -5.4169990E-02 AU
    INDIRECT ENERGY BAND GAP:   8.4470 eV
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT PDIG        TELAPSE      223.93 TCPU      210.55
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD      TELAPSE      223.95 TCPU      210.57
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT SHELLXN     TELAPSE      400.73 TCPU      385.75
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MONMO3      TELAPSE      401.80 TCPU      386.81
    NUMERICALLY INTEGRATED DENSITY    520.0000608459
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT NUMDFT      TELAPSE      405.15 TCPU      390.13
    CYC   1 ETOT(AU) -5.425598620573E+03 DETOT  7.49E+00 tst  0.00E+00 PX  1.00E+00
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT DIIS        TELAPSE      406.19 TCPU      391.17
    DIIS TEST: 0.14136E+02 AT SCF   CYCLE   1 - MIX   30 %
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FDIK        TELAPSE      408.41 TCPU      393.36
    INSULATING STATE
    TOP OF VALENCE BANDS -    BAND    260; K    3; EIG -2.2132709E-01 AU
    TOP OF VALENCE BANDS -    BAND    260; K    1; EIG -2.2385187E-01 AU
    BOTTOM OF VIRTUAL BANDS - BAND    261; K    3; EIG -2.2027347E-01 AU
    DIRECT ENERGY BAND GAP:   0.0287 eV
    BOTTOM OF VIRTUAL BANDS - BAND    261; K    1; EIG -2.1783865E-01 AU
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT PDIG        TELAPSE      408.82 TCPU      393.77
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD      TELAPSE      408.85 TCPU      393.79
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT SHELLXN     TELAPSE      589.22 TCPU      572.52
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MONMO3      TELAPSE      590.29 TCPU      573.58
    NUMERICALLY INTEGRATED DENSITY    520.0000793911
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT NUMDFT      TELAPSE      593.60 TCPU      576.86
    CYC   2 ETOT(AU)  1.309897924868E+04 DETOT  1.85E+04 tst  1.99E-01 PX  1.92E+02
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT DIIS        TELAPSE      594.50 TCPU      577.75
    DIIS TEST: 0.59042E+05 AT SCF   CYCLE   2 - DIIS ACTIVE - HISTORY:     2 CYCLES
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FDIK        TELAPSE      597.39 TCPU      580.62
    POSSIBLY CONDUCTING STATE - EFERMI(AU) -2.0063335E-01 (RES. CHARGE  0.00E+00;IT.  8)
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT PDIG        TELAPSE      597.80 TCPU      581.03
    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD      TELAPSE      597.82 TCPU      581.05
    
    24kaw25, Wheeler B3LYP-D3/pob2-TZVP
    SLAB
    1
    6.941300000000  6.048800000000  90.0000000000
    116
     12  0.000000000000  0.635070000000  7.673917144000
     12  0.500000000000  0.364930000000  2.071943048000
      7  0.000000000000  0.609540000000  3.622984158000
      7  0.500000000000  0.390460000000  9.224958254000
      1  0.000000000000  0.759940000000  3.094427258000
      1  0.500000000000  0.240060000000  8.696401354000
      1  0.000000000000  0.632050000000  4.646197412000
      1  0.500000000000  0.367950000000  10.248171508000
      1  0.879320000000  0.513920000000  3.398074084000
      1  0.620680000000  0.486080000000  9.000048180000
      1  0.379320000000  0.486080000000  9.000048180000
      1  0.120680000000  0.513920000000  3.398074084000
      1  0.000000000000  0.279550000000  9.554850664000
      1  0.500000000000  0.720450000000  3.952876568000
      1  0.000000000000  0.182760000000  8.058852376000
      1  0.500000000000  0.817240000000  2.457242802000
      1  0.882340000000  0.018940000000  6.340131146000
      1  0.617660000000  0.981060000000  0.738157050000
      1  0.382340000000  0.981060000000  0.738157050000
      1  0.117660000000  0.018940000000  6.340131146000
      1  0.795870000000  0.798940000000  9.837719736000
      1  0.704130000000  0.201060000000  4.235745640000
      1  0.295870000000  0.201060000000  4.235745640000
      1  0.204130000000  0.798940000000  9.837719736000
      1  0.677570000000  0.842940000000  8.468575104000
      1  0.822430000000  0.157060000000  2.866601008000
      1  0.177570000000  0.157060000000  2.866601008000
      1  0.322430000000  0.842940000000  8.468575104000
      1  0.751930000000  0.380470000000  6.186667384000
      1  0.748070000000  0.619530000000  0.584693288000
      1  0.251930000000  0.619530000000  0.584693288000
      1  0.248070000000  0.380470000000  6.186667384000
      1  0.680690000000  0.630540000000  6.048513546000
      1  0.819310000000  0.369460000000  0.446539450000
      1  0.180690000000  0.369460000000  0.446539450000
      1  0.319310000000  0.630540000000  6.048513546000
     15  0.000000000000  0.992450000000  0.635361846000
     15  0.500000000000  0.007550000000  6.237335942000
      8  0.000000000000  0.009990000000  2.188225566000
      8  0.500000000000  0.990010000000  7.790199662000
      8  0.000000000000  0.227470000000  0.000000000000
      8  0.500000000000  0.772530000000  5.601974096000
      8  0.815480000000  0.869250000000  0.164399422000
      8  0.684520000000  0.130750000000  5.766373518000
      8  0.315480000000  0.130750000000  5.766373518000
      8  0.184520000000  0.869250000000  0.164399422000
      8  0.000000000000  0.321630000000  8.585586666000
      8  0.500000000000  0.678370000000  2.983612570000
      8  0.000000000000  0.961380000000  6.819842098000
      8  0.500000000000  0.038620000000  1.217868002000
      8  0.775010000000  0.741730000000  8.897617498000
      8  0.724990000000  0.258270000000  3.295643402000
      8  0.275010000000  0.258270000000  3.295643402000
      8  0.224990000000  0.741730000000  8.897617498000
      8  0.795320000000  0.537080000000  6.309146776000
      8  0.704680000000  0.462920000000  0.707172680000
      8  0.295320000000  0.462920000000  0.707172680000
      8  0.204680000000  0.537080000000  6.309146776000
     12  0.000055181143  0.642423246648  18.952805694939
     12  0.499968712070  0.359091331327  13.316951631404
      7  0.999972419819  0.607922549871  14.811931178503
      7  0.500032820915  0.374493259165  20.607875452763
      1  0.999967775128  0.761035687659  14.285224372371
      1  0.500024408367  0.231282387067  19.980070581145
      1  0.000049335267  0.630999080449  15.834297557834
      1  0.500035578757  0.323113627197  21.592895058969
      1  0.878965402060  0.512403220987  14.584972088385
      1  0.621417580147  0.473429110408  20.448901068640
      1  0.378637955989  0.473419664325  20.449096362978
      1  0.120958490217  0.512389524338  14.584662707152
      1  0.000038262428  0.286971264697  20.839026174200
      1  0.499976846001  0.719030459798  15.208615937423
      1  0.000031652857  0.183720331388  19.368757970078
      1  0.499962587461  0.812393898264  13.708071297047
      1  0.881129385187  0.025384175065  17.701709365846
      1  0.618303319337  0.976323476423  12.023082502655
      1  0.381680681554  0.976326416490  12.023029151635
      1  0.118902081576  0.025399879088  17.701715179654
      1  0.808205372618  0.815305089745  21.141212571392
      1  0.705829500597  0.198701057668  15.514284350783
      1  0.294143703130  0.198674577330  15.514249459923
      1  0.191805105872  0.815194713566  21.140381020646
      1  0.673115382056  0.844941364529  19.846899953099
      1  0.823923510617  0.151506479347  14.146206321119
      1  0.176023131841  0.151469318362  14.146216910114
      1  0.327023452141  0.845010844051  19.846534283710
      1  0.750367862943  0.386439470346  17.517960498796
      1  0.749049653505  0.616905692785  11.854132909652
      1  0.250894103625  0.616910590766  11.854150510245
      1  0.249431259009  0.386569920248  17.514616398008
      1  0.679248141518  0.637305821880  17.359340307128
      1  0.820585570635  0.365779754992  11.718391108508
      1  0.179348008233  0.365782935954  11.718380956392
      1  0.320603511775  0.637411081575  17.355827105892
     15  0.999982619790  0.989769973894  11.912791195026
     15  0.500034066777  0.010109737474  17.586160551526
      8  0.999977130250  0.008378372796  13.482219637594
      8  0.500051774355  0.985803116254  19.155427625100
      8  0.999972597569  0.224666739494  11.289761779305
      8  0.500062864578  0.777524735121  16.932581966277
      8  0.815197855894  0.866439171059  11.462825873575
      8  0.684945889534  0.134772823386  17.153151542429
      8  0.315114506494  0.134773647764  17.153214140889
      8  0.184779657134  0.866458207976  11.462864231870
      8  0.000168617074  0.326193905357  19.885342783193
      8  0.499945718642  0.674248819743  14.254174402631
      8  0.000017024920  0.969882792128  18.193667353551
      8  0.499990453186  0.031286049422  12.518851429605
      8  0.773875725590  0.744231064657  20.285639546306
      8  0.725152330839  0.252886404241  14.580031105178
      8  0.274798811878  0.252853533207  14.580022853290
      8  0.226270437836  0.744208214236  20.284780629094
      8  0.793051733553  0.543556473262  17.649841236387
      8  0.707489281917  0.460063723256  12.013962650601
      8  0.292446148266  0.460065205509  12.013963248493
      8  0.206746930953  0.543696608054  17.645732574538
    FREQCALC
    PREOPTGEOM
    ATOMONLY
    FRAGMENT
    58
    1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58
    ENDOPT
    END
    BASISSET
    POB-DZVP-REV2
    DFT
    B3LYP-D3
    XLGRID
    END
    TOLINTEG
    8 8 8 10 20
    MAXCYCLE
    200
    SHRINK
    2 2
    LEVSHIFT
    5 1
    BIPOSIZE
    60202400
    EXCHSIZE
    60202400
    TOLDEE
    10
    END
    

    No, same problem, Alessando, is there something wrong with my structure or something, can you please take a look why convergence problem? 24kaw25, Wheeler B3LYP-D3/pob2-TZVP SLAB 1 6.941300000000 6.048800000000 90.0000000000 116 12 0.000000000000 0.635070000000 7.673917144000 12 0.500000000000 0.364930000000 2.071943048000 7 0.000000000000 0.609540000000 3.622984158000 7 0.500000000000 0.390460000000 9.224958254000 1 0.000000000000 0.759940000000 3.094427258000 1 0.500000000000 0.240060000000 8.696401354000 1 0.000000000000 0.632050000000 4.646197412000 1 0.500000000000 0.367950000000 10.248171508000 1 0.879320000000 0.513920000000 3.398074084000 1 0.620680000000 0.486080000000 9.000048180000 1 0.379320000000 0.486080000000 9.000048180000 1 0.120680000000 0.513920000000 3.398074084000 1 0.000000000000 0.279550000000 9.554850664000 1 0.500000000000 0.720450000000 3.952876568000 1 0.000000000000 0.182760000000 8.058852376000 1 0.500000000000 0.817240000000 2.457242802000 1 0.882340000000 0.018940000000 6.340131146000 1 0.617660000000 0.981060000000 0.738157050000 1 0.382340000000 0.981060000000 0.738157050000 1 0.117660000000 0.018940000000 6.340131146000 1 0.795870000000 0.798940000000 9.837719736000 1 0.704130000000 0.201060000000 4.235745640000 1 0.295870000000 0.201060000000 4.235745640000 1 0.204130000000 0.798940000000 9.837719736000 1 0.677570000000 0.842940000000 8.468575104000 1 0.822430000000 0.157060000000 2.866601008000 1 0.177570000000 0.157060000000 2.866601008000 1 0.322430000000 0.842940000000 8.468575104000 1 0.751930000000 0.380470000000 6.186667384000 1 0.748070000000 0.619530000000 0.584693288000 1 0.251930000000 0.619530000000 0.584693288000 1 0.248070000000 0.380470000000 6.186667384000 1 0.680690000000 0.630540000000 6.048513546000 1 0.819310000000 0.369460000000 0.446539450000 1 0.180690000000 0.369460000000 0.446539450000 1 0.319310000000 0.630540000000 6.048513546000 15 0.000000000000 0.992450000000 0.635361846000 15 0.500000000000 0.007550000000 6.237335942000 8 0.000000000000 0.009990000000 2.188225566000 8 0.500000000000 0.990010000000 7.790199662000 8 0.000000000000 0.227470000000 0.000000000000 8 0.500000000000 0.772530000000 5.601974096000 8 0.815480000000 0.869250000000 0.164399422000 8 0.684520000000 0.130750000000 5.766373518000 8 0.315480000000 0.130750000000 5.766373518000 8 0.184520000000 0.869250000000 0.164399422000 8 0.000000000000 0.321630000000 8.585586666000 8 0.500000000000 0.678370000000 2.983612570000 8 0.000000000000 0.961380000000 6.819842098000 8 0.500000000000 0.038620000000 1.217868002000 8 0.775010000000 0.741730000000 8.897617498000 8 0.724990000000 0.258270000000 3.295643402000 8 0.275010000000 0.258270000000 3.295643402000 8 0.224990000000 0.741730000000 8.897617498000 8 0.795320000000 0.537080000000 6.309146776000 8 0.704680000000 0.462920000000 0.707172680000 8 0.295320000000 0.462920000000 0.707172680000 8 0.204680000000 0.537080000000 6.309146776000 12 0.000055181143 0.642423246648 18.952805694939 12 0.499968712070 0.359091331327 13.316951631404 7 0.999972419819 0.607922549871 14.811931178503 7 0.500032820915 0.374493259165 20.607875452763 1 0.999967775128 0.761035687659 14.285224372371 1 0.500024408367 0.231282387067 19.980070581145 1 0.000049335267 0.630999080449 15.834297557834 1 0.500035578757 0.323113627197 21.592895058969 1 0.878965402060 0.512403220987 14.584972088385 1 0.621417580147 0.473429110408 20.448901068640 1 0.378637955989 0.473419664325 20.449096362978 1 0.120958490217 0.512389524338 14.584662707152 1 0.000038262428 0.286971264697 20.839026174200 1 0.499976846001 0.719030459798 15.208615937423 1 0.000031652857 0.183720331388 19.368757970078 1 0.499962587461 0.812393898264 13.708071297047 1 0.881129385187 0.025384175065 17.701709365846 1 0.618303319337 0.976323476423 12.023082502655 1 0.381680681554 0.976326416490 12.023029151635 1 0.118902081576 0.025399879088 17.701715179654 1 0.808205372618 0.815305089745 21.141212571392 1 0.705829500597 0.198701057668 15.514284350783 1 0.294143703130 0.198674577330 15.514249459923 1 0.191805105872 0.815194713566 21.140381020646 1 0.673115382056 0.844941364529 19.846899953099 1 0.823923510617 0.151506479347 14.146206321119 1 0.176023131841 0.151469318362 14.146216910114 1 0.327023452141 0.845010844051 19.846534283710 1 0.750367862943 0.386439470346 17.517960498796 1 0.749049653505 0.616905692785 11.854132909652 1 0.250894103625 0.616910590766 11.854150510245 1 0.249431259009 0.386569920248 17.514616398008 1 0.679248141518 0.637305821880 17.359340307128 1 0.820585570635 0.365779754992 11.718391108508 1 0.179348008233 0.365782935954 11.718380956392 1 0.320603511775 0.637411081575 17.355827105892 15 0.999982619790 0.989769973894 11.912791195026 15 0.500034066777 0.010109737474 17.586160551526 8 0.999977130250 0.008378372796 13.482219637594 8 0.500051774355 0.985803116254 19.155427625100 8 0.999972597569 0.224666739494 11.289761779305 8 0.500062864578 0.777524735121 16.932581966277 8 0.815197855894 0.866439171059 11.462825873575 8 0.684945889534 0.134772823386 17.153151542429 8 0.315114506494 0.134773647764 17.153214140889 8 0.184779657134 0.866458207976 11.462864231870 8 0.000168617074 0.326193905357 19.885342783193 8 0.499945718642 0.674248819743 14.254174402631 8 0.000017024920 0.969882792128 18.193667353551 8 0.499990453186 0.031286049422 12.518851429605 8 0.773875725590 0.744231064657 20.285639546306 8 0.725152330839 0.252886404241 14.580031105178 8 0.274798811878 0.252853533207 14.580022853290 8 0.226270437836 0.744208214236 20.284780629094 8 0.793051733553 0.543556473262 17.649841236387 8 0.707489281917 0.460063723256 12.013962650601 8 0.292446148266 0.460065205509 12.013963248493 8 0.206746930953 0.543696608054 17.645732574538 FREQCALC PREOPTGEOM ATOMONLY FRAGMENT 58 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 ENDOPT END BASISSET POB-DZVP-REV2 DFT PBE-D3 XLGRID END TOLINTEG 7 7 7 9 20 SHRINK 2 2 NODIIS LEVSHIFT 10 1 FMIXING 80 BIPOSIZE 60202400 EXCHSIZE 60202400 TOLDEE 10 END
  • job314

    A silly question, I am getting ERROR **** INPBAS **** NO BASIS FUNCTION FOR ATOMIC NUMBER 0

    and for the life of me I can't understand why, perhaps someone could help me please?

    INPUT.d12


    still... Bunch of conducting state errors... See my other question I posted yesterday TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD TELAPSE 34.62 TCPU 27.32 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT SHELLXN TELAPSE 48.22 TCPU 40.80 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MONMO3 TELAPSE 48.96 TCPU 41.53 NUMERICALLY INTEGRATED DENSITY 520.0000438871 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT NUMDFT TELAPSE 50.47 TCPU 43.02 CYC 0 ETOT(AU) -5.435702682558E+03 DETOT -5.44E+03 tst 0.00E+00 PX 1.00E+00 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT DIIS TELAPSE 50.54 TCPU 43.09 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FDIK TELAPSE 67.01 TCPU 59.44 INSULATING STATE TOP OF VALENCE BANDS - BAND 260; K 4; EIG -3.5407947E-01 AU TOP OF VALENCE BANDS - BAND 260; K 1; EIG -3.5465882E-01 AU BOTTOM OF VIRTUAL BANDS - BAND 261; K 1; EIG -9.7720242E-02 AU INDIRECT ENERGY BAND GAP: 6.9759 eV TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT PDIG TELAPSE 67.20 TCPU 59.63 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD TELAPSE 67.21 TCPU 59.64 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT SHELLXN TELAPSE 82.51 TCPU 74.72 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MONMO3 TELAPSE 83.25 TCPU 75.45 NUMERICALLY INTEGRATED DENSITY 520.0000477011 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT NUMDFT TELAPSE 84.82 TCPU 77.01 CYC 1 ETOT(AU) -5.426772006556E+03 DETOT 8.93E+00 tst 0.00E+00 PX 1.00E+00 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT DIIS TELAPSE 85.84 TCPU 78.03 DIIS TEST: 0.21039E+02 AT SCF CYCLE 1 - MIX 30 % TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FDIK TELAPSE 88.64 TCPU 80.80 POSSIBLY CONDUCTING STATE - EFERMI(AU) -7.6647369E-02 (RES. CHARGE 0.00E+00;IT. 0) TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT PDIG TELAPSE 88.82 TCPU 80.98 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT MOQGAD TELAPSE 88.83 TCPU 80.99
  • Drmajouri2025

    ~~Dear CRYSTAL members,

    I was trying to run a band job and the task finish correctly but i dint find the .DATA. Since I guess the problem is related to the path and number of k-points (need higher number based on the 197 band level of present gap), I was trying to use the d3 file generated with CRYSTALLine and it also says " the requested array has an inhomogeneous shape after 1 dimension.
    These is the last printed outp section:

    CORE DENSITY MATRIX CALCULATION
     TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT NEWK        TELAPSE       36.20 TCPU       36.18
     WARNING **** F90MAIN3 **** BF SYMMETRY ADAPTED-INFO MODIFIED BY BAND-CALL NEWK
    
    
     *******************************************************************************
     *                                                                             *
     *  BAND STRUCTURE                                                             *
     *  Gd hcp band structure                                                      *
     *  FROM BAND 175 TO BAND 225                                                  *
     *  TOTAL OF1000 K-POINTS ALONG THE PATH                                       *
     *                                                                             *
     *******************************************************************************
    
     LINE  1 ( 0.00 0.00 0.50: 0.50 0.00 0.50) IN TERMS OF PRIMITIVE LATTICE VECTORS
     174 POINTS - SHRINKING_FACTOR2076
     CARTESIAN COORD. ( 0.000 0.000 0.121):( 0.246 0.000 0.121) STEP  0.0014
    
    
     LINE  2 ( 0.50 0.00 0.50: 0.50 0.00 0.00) IN TERMS OF PRIMITIVE LATTICE VECTORS
      85 POINTS - SHRINKING_FACTOR1020
     CARTESIAN COORD. ( 0.246 0.000 0.121):( 0.246 0.000 0.000) STEP  0.0014
    
    
     LINE  3 ( 0.50 0.00 0.00: 0.00 0.00 0.00) IN TERMS OF PRIMITIVE LATTICE VECTORS
     173 POINTS - SHRINKING_FACTOR2076
     CARTESIAN COORD. ( 0.246 0.000 0.000):( 0.000 0.000 0.000) STEP  0.0014
    
    
     LINE  4 ( 0.00 0.00 0.00: 0.00 0.00 0.50) IN TERMS OF PRIMITIVE LATTICE VECTORS
      85 POINTS - SHRINKING_FACTOR1020
     CARTESIAN COORD. ( 0.000 0.000 0.000):( 0.000 0.000 0.121) STEP  0.0014
    at Oct 17 17:37:02 CET 2026
    Contents of temporary directory:
    total 430820
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader 163747136 Oct 17 17:36 fort.10
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader    562056 Oct 17 17:35 fort.11
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader   9291720 Oct 17 17:36 fort.13
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader    562056 Oct 17 17:35 fort.3
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader   5121544 Oct 17 17:37 fort.61
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader   4361920 Oct 17 17:37 fort.62
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader 256761064 Oct 17 17:36 fort.8
    -rw-r--r-- 1 majouri-abdelkader majouri-abdelkader    731404 Oct 17 17:35 fort.9~~
    

    Dear @drmajouri2025, Could you provide us your .d3, .outp, and eventually the .f9 or the related .d12, so that we can try to find the issue?
  • dmitoli

    Dear CRYSTAL community,

    We would like to introduce the beta release of CRYSTALLine, a new desktop app to display and edit structures for CRYSTAL, to animate phonon modes, and to plot the properties a calculation returns. It's cross-platform: it runs on Linux, macOS and Windows. It is built on CRYSTALClear, and is free software under the GNU GPL v3.

    CRYSTALLine follows in the tradition of MOLDRAW, written by Prof. Piero Ugliengo, which served this community for over twenty years: a program on your own machine for looking at a structure and editing it.

    screen3.png

    What it does

    • Handling of CRYSTAL outputs, .gui/.f34 and CIF files, each in a tab of its own, with crystallographic and calculation data beside it.
    • Automated live detection of symmetry (through spglib).
    • Easy structure editing through drag-and-drop: add, move, delete or change atoms, build supercells, switch between primitive and crystallographic settings.
    • Animation of vibrational modes of a frequency calculation, including out-of-Γ phonons with several exporting options.
    • Input builder for CRYSTAL (.d12) and PROPERTIES (.d3) from the structure on screen.
    • First Brillouin Zone visualiser and k-path selection.
    • Advanced plotting tools (from CRYSTALClear): electronic and phonon band structure, densities of states, IR and Raman spectra (harmonic and anharmonic), elastic surfaces and sections, equations of state, and simulated XRD patterns. Most plots have their options beside them and are redrawn as these are changed.
    • Visualisation of crystalline orbitals, charge density and electrostatic potential over the structure as isosurfaces or as slices along a lattice plane.

    Installing

    It needs Python 3.11 or newer, best in an environment of its own:

    conda create --name crystal python=3.12
    conda activate crystal
    pip install CRYSTALLine
    crystalline
    

    The documentation has a small MgO example to try it, with a band structure and a phonon dispersion.

    This is a beta

    Accidents may take place. We would be grateful for reports of anything that fails or looks wrong, either in reply to this post or at github.com/crystaldevs/CRYSTALLine/issues. Suggestions for what to add next are more than welcome too.

    Links

    Documentation: crystaldevs.github.io/CRYSTALLine
    Source code: github.com/crystaldevs/CRYSTALLine
    PyPI: pypi.org/project/CRYSTALLine

    Give it a try!


  • Marco_Saccone

    Dear CRYSTAL developers,

    I would appreciate your help on the numerical DFT integration in a periodic calculation on an Einsteinium compound.

    I am using CRYSTAL23 public 1.0.1 (October 2022), PcrystalOMP, with unrestricted PBEsol and no SOC. The primitive cell contains 2 Es and 6 Cl atoms, with 180 explicit electrons.

    The basis sets are Es_ERD_SMALL_CORE_PP_4F_IN_VALENCE_NO_G_2017 and Cl_pob_TZVP_rev2, which were downloaded from the CRYSTAL website. Es uses the scalar ECP60MWB, replacing 60 core electrons per atom. Gaussian exponents, contractions and ECP terms are unchanged; CHE occupations were set for an Es3+/Cl− initial guess.

    The analytical/Mulliken electron count is 180, but the DFT parameters report:
    ATOM ELECTRONS NET CHARGE R(ANGSTROM)
    1 299 QC 36.0000 0.0000 0.00000529
    3 17 CL 18.0000 -1.0000 1.81000000

    Earlier RADIUS attempts with selectors 299 and 99 did not change the printed Es radius.

    I have also performed three controlled GUESSP restarts using the same checkpoint and MAXCYCLE = 1. The following values refer to the initial density, before its first SCF update:
    he following values refer to the initial density, before its first SCF update:

    Configuration
    Earlier XLGRID reference

    Numerically integrated electrons
    230.5302349807

    Configuration
    T1: XLGRID, RADIUS 39 1.30 and Cl control 17 1.50

    Numerically integrated electrons
    225.2419084303

    Configuration
    T2: dense grid, 4 MPI × 5 OMP

    Numerically integrated electrons
    183.1163944507

    Configuration
    T3: identical dense input, 1 MPI × 1 OMP

    Numerically integrated electrons
    183.1163944507

    In T1, the Cl radius correctly changes to 1.50 Å, while the Es radius remains unchanged. Selector 39 was only a diagnostic hypothesis.

    T2/T3 use 150 radial points, an unpruned angular grid with Lebedev level 18 (1454 points), TOLLDENS 10 and TOLLGRID 18. Their initial analytical count and spin remain 180 and 8, respectively.

    The cycle 0 energy changes from −4481.917602872 Eh with the reference grid to −4251.426787439 Eh with the dense grid. T2 and T3 agree in both numerical electron count and cycle 0 energy.

    An ATOSCF warning occurred during the earlier Es atomic guess calculation, but is absent from these GUESSP diagnostics. The SCF cycle-limit termination is intentional.

    What I would like to understand:

    Is the 299 QC entry and its very small DFT radius expected for Es with this official basis/ECP? Such a small radius (well below the proton radius) looks suspicious

    What is the supported way to control the integration radius or grid for this center?

    Is this behavior associated with a known limitation of this build, and what numerical settings or correction would you recommend?

    Exact inputs and complete outputs are attached. T2 and T3 share the same dense-grid input; the corresponding restart checkpoint is available if needed for reproduction.

    Thanks in advance for your time

    -MS-

    [email protected]

    EsCl3_reference_XLGRID.out EsCl3_T3_dense_1MPI_1OMP.out EsCl3_T2_dense_4MPI_5OMP.out EsCl3_T1_radius39.out EsCl3_T1_radius39.d12 EsCl3_dense_grid.d12


  • job314

    HI all, admittedly I am running these large frequency jobs and they run out of queue and I can't restart them, there is always some problem, this one is io error, hard to troubleshoot

    FREQINFO.DAT output.out TENS_RAMAN.DAT INPUT.d12


    Dear Developers, I've recently encountered issues in calculating Raman intensities for huge systems. I have a series of huge structures with low symmetry, and for each of them I successfully performed geometry optimization and frequency computations (no imaginary modes, after some refinement of computational conditions). For each of them, without any problem, I used the RESTART option to obtain IR intensities and spectra with CPHF. However, when I tried to calculate the Raman intensities and spectra using the same .freqinfo files, I succeeded only for some of them. Used keywords: FREQCALC RESTART ANALYSIS INTRAMAN INTCPHF FMIXING 30 MAXCYCLE 400 TOLALPHA 4 END DIELTENS 2.508762 0.00 0.00 0.00 2.529189 0.00 0.00 0.00 2.807502 RAMANEXP 20 532 RAMSPEC END END END I did several trials with different computational resources used (up to 16 nodes/2.8 TiB of mem). In all trials, computations proceeded properly for several hours, but always broke at the moment when the matrix of second hyperpolarizabilities should be written into the .out, without giving any informative error message -> see the attached .out file C6O6I2.out . The .freqinfo file is to big to be attached here, but I can share it, if needed. Do you have an idea what can be the problem?
  • Igor12

    Hello!
    I'm having trouble calculating the elastic tensor using the ELASTCON keyword.
    Every time, the calculation stops at STRAIN MATRIX 3
    The structure's geometry has been pre-optimized.
    Could you tell me what the problem might be and if it can be fixed?
    INPUT.d12
    fort34.txt
    fort87.txt


    Hello, @aerba! The method you proposed actually worked. Thank you very much for your help in resolving this issue.
  • piquini

    Is there a way to estimate the necessary RAM to run a job, given specifications of this job as: number and types of atoms in the assymetric unit cell, basis sets, exchange and correlation functional, number of k-points, MPI tasks and number of threads?


    Hi, While there is no option to estimate the necessary memory, there are a couple of advanced printing options to monitor the memory used step-by-step throughout the calculation. Please, refer to the MEMOPRT and MEMOPRT2 keywords in the User's Manual. Let me know if this helps,
  • J_Manisha

    Dear CRYSTAL Team,

    Recently I have encounered an issue while using CRYSTAL software. My jobs get stuck at cell and coordinate opimization stage, the job status show 'running' but out file and temporary files are not being updated for days. Could you tell me what might be causing this issue and how do I resolve this?

    I am sharing my input file and .out file for reference, please find attached documents.

    Thank you
    GO4O3-th.d12 GO4O3-th.out


    Hi, The input/output files you uploaded look fine. It is difficult for me to understand what happened.
  • job314

    I am sorry for the ignorant question:

    what is the purpose of MOLEBSSE keyword (I mean I know what is the purpose, I am confused about its usability)? I am running a classical CRYSTAL and MOLECULE calculation (extracted from CRYSTAL at crystalline geometry) and the same MOLECULE extracted from crystal and optimized to calculate the formation energy (E(crystal)-n*E(molecule)) and strain energy (E(molecule in crystalline geometry)-E(optimized molecule)). For the fully optimized molecule (to get lattice or cohesive energy) I extract the unit with the keyword MOLECULE the molecule that composes the crystal, and optimize it. No MOLEBSSE needed here.

    BUt then I would also like to see this "strain" energy, e.g. how much that molecule reorganizes from the crystalline geometry during optimization in a gas phase. But for that, I can again do single point with MOLECULE extraction from a crystal, compare that with fully optimized molecule and I am done. MOLECULE keyword generates a single molecule in gas phase. There are no neighboring molecules (that would contribute their basis sets which can be corrected with BSSE) when one uses MOLECULE keyword. So why have MOLEBSSE here? I knew why but I somehow lost it when I was thinking about it, sorry

    Jonas


    Hi Jonas, I see from your input that you are scanning along mode number 12 (with positive harmonic frequency of ~66 inverse centimeters). Have you tried scanning along mode 1 (with "negative" harmonic frequency of ~-14 inverse centimeters)?
  • pw_mit

    Hi,
    I'm trying to optimize a crystal with B97-3c with the following input:

    Glycine beta form
    CRYSTAL
    0 0 0
    4
    5.0932 6.272 5.3852 113.19
    10
    {N x y z}*10
    OPTGEOM
    FULLOPTG
    ENDOPT
    BASISSET
    mTZVP
    DFT
    B973C
    ENDDFT
    SHRINK
    0 4
    5 4 5
    ENDSCF
    

    However, it failed with message "ERROR **** CRYSTA **** KEYWORD MTZVP NOT ALLOWED".
    Although, it runs well when I remove "OPTGEOM \ FULLOPTG \ ENDOPT".

    It seems that 'BASISSET' was not parsed properly.
    Do I do anything wrong? Or has anyone seen this issue before?


    Hi Filippo, Thank you for jump in to help! Glad to hear it works on your end. I did expect it to work as following the manual. Here's the input glycine.d12 and output glycine.out files. Uploading fort.7 file is not allowed here. It has two lines in it: ERROR **** CRYSTA **** KEYWORD MTZVP NOT ALLOWED ERROR **** CRYSTA **** KEYWORD MTZVP NOT ALLOWED And there is a warning from the system as: forrtl: warning (496): BACKSPACE is a no-op on a terminal device This run was tested with slurm on 1 core on a 48-core machine with such commands: #SBATCH --nodes=1 #SBATCH --ntasks=1 export OMP_STACKSIZE=16M export OMP_NUM_THREADS=1 mpirun -np 1 MPPcrystalOMP < glycine.d12 > glycine.out Since it worked on your end but not mine, I'm afraid it is because something was missing in the building. Is there any clue come to your mind? Thanks, Peng
  • piquini

    I generated a nanotube from a slab. After optimizing I would like to use the symmetry of the nanotube and (only) the atoms of the assymetric unit in additional calculations. However, by getting the coordinates of the atoms of the assymetric cell in the output, and using the group as identified through the symmetry operations in the .gui file, the supercell generated (when looking at it in the crysplot) is not what I expected. There are some atoms very close to each other. Is there a robust way to select the atoms of the assymetric cell and the symmetry group in order to proceed with further calculations? Or, what I am doing wrong?


    Dear Silvia, thank you very much for your help. Using the EXTERNAL and the .gui file solved my problem
  • Luz

    Hello,

    I have performed a topological calculation using the TRHO keyword. In my output file, within the "CRITICAL POINTS FOUND" section, I notice that some atoms or sites are labeled as "PS" instead of a chemical symbol. The "PS" label is associated with a (3,-1) critical point.
    Could anyone please explain what the "PS" label stands for and how to interpret it? If "PS" represents an atom, is there any way to determine which atom it is?

    It is worth mentioning that I used a pseudopotential for one of the atoms in my system. Please find below the relevant section of my output file, as well as the input file used for the calculation.

    Thank you in advance for your help.

    Best regards

    Captura desde 2026-06-14 00-30-41.png

    Captura desde 2026-06-14 00-39-17.png


    @aerba Thank you for your response, it has been very helpful. Best regards
  • Alexander

    Hello!

    I am getting previously unseen error when doing NEWK. Two other similar solid solutions worked well with the same inputs.

    NEWK
    0 0
    1 0
    XFAC
    -8
    1
    DW
    0 0
    END
    XRDSPEC
    8
    1.5406
    1
    END

    *** K POINTS COORDINATES (OBLIQUE COORDINATES IN UNITS OF IS = 4)
    1-R( 0 0 0) 2-C( 1 0 0) 3-R( 2 0 0) 4-C( 1 1 0)
    5-C( 2 1 0) 6-R( 2 2 0) 7-C( 0 0 1) 8-C( 1 0 1)
    9-C( 2 0 1) 10-C( 1 1 1) 11-C( 2 1 1) 12-C( 2 2 1)
    13-R( 0 0 2) 14-C( 1 0 2) 15-R( 2 0 2) 16-C( 1 1 2)
    17-C( 2 1 2) 18-R( 2 2 2)
    ERROR **** KLGCLS **** OPERATION LOST IN LITTLE GROUP K = 1

    CrTaO4_SG136_SIC5_FREQ.d3
    CrTaO4_SG136_SIC5_FREQ.f9
    CrTaO4_SG136_SIC5_FREQ.outp


  • rbnfritz

    Hi,

    I am trying to reproduce the results of an article that specifically focuses on LiNbO3. When using the 'BETAVIB' option, the manual states that the estimation is performed via "d", and the result is printed in the output as:

    " VIBRATIONAL POCKELS TENSOR, FREQ.=

    DIRECTION CHI(2)"
    And

    VIBRATIONAL SHG TENSOR, FREQ.=

    DIRECTION CHI(2)

    But in this article https://onlinelibrary.wiley.com/doi/full/10.1002/pssb.20230005, they (or maybe I misunderstood) said they compute beta using crystal17, and the same is true in this one: https://www.sciencedirect.com/science/article/pii/S0927025623005232. Also, https://journals.aps.org/prb/abstract/10.1103/PhysRevB.107.045140 seems to follow the same rule.

    I want to clarify which term is printed in the output file "Using" BETAVIB, and in what unit it is printed?.

    Best.
    Rubén Fritz.


    Excellent, thank you for the quick feedback.
  • CaesarSalad

    Hello, I used an example from the Crystal23 manual to build an input file for Wannierization of the fort.9 , however, the program says that the input deck is empty. This is the file so far:

    NEWK
    6 6
    1 0
    LOCALWF
    VALENCE
    SYMMWF
    END
    VALENCE
    SYMMWF
    END
    PRINTPLO
    0 0 0 -8
    1 1 60 1
    1
    END
    END
    END

    I was trying to run it via Pproperties - could this also be an issue?

    Chris


    Hi Giacomo Now that you pointed that out... I can see that my launch script was at fault indeed. I wasn't actually passing the correct file name to the launch script. It is running well now, thanks a lot! C.
  • leszek_malec

    Dear developers,

    I tried to add the D3-BJ correction to HISS and PBESOL0 functionals using the DFTD3 section, as D3 is not implemented automatically in the CRYSTAL code by the addition of "-D3" for these functionals. I used such SCF section:

    DFT
    HISS
    SPIN
    XXLGRID
    END DFT
    DFTD3
    VERSION
    4
    S6
    1.0000
    S8
    1.6112
    A1
    0.0000
    A2
    7.3539
    END
    SPINLOCK
    24 30
    SHRINK
    4 4
    TOLINTEG
    10 10 10 10 20
    TOLDEE
    9
    MAXCYCLE
    1000
    EXCHSIZE
    90000000
    BIPOSIZE
    90000000
    FMIXING
    40
    POSTSCF
    PPAN
    END SCF
    

    The same implementation works properly if the keyword HISS is changed to PBE0 or CAM-B3LYP, but not for PBESOL0. For HISS and PBESOL0 computations immediately crash. Is there a method to work around this problem?


    Hi Lorenzo, It is quite non-intuitive, but it works properly. Thank you very much. Best regards, Leszek
  • job314

    I have a paper revisions requested and they asked for stability calculations. I found a similar paper, they used MD calculations. Thier plot are shown below and they talk about atomic vibrations and Dulong-Petit law. I was wondering if that has anything to do with lattice dynamics of any sort I can calculate in CRYSTAL to measure this equilibrium point before phase transition occurs? So not necessarily the method in the paper below, but something similar that show molecular stability with a temperature in a similar fashion?

    Thank you

    bf93868b-b329-471b-8f47-9e8ae81c0f3c-image.png


    Also, is there a way to restart calculations since I want to run for a series of increasing temperatures?
  • Chhatra

    Dear User!

    Could someone please help me understand what the number ‘67 501’ in the INPUT section is used for?
    NEWK
    3 3
    1 1
    67 501
    LOCALI
    END
    ORBITALS
    Corundum-CMOs
    1
    1
    END
    EN

    Screenshot from 2026-05-04 17-28-07.png

    Thank you


    Thankyou so much for your guidance. I will try!
  • Alexander

    Hello,

    I get this error after optimising the geometry of one of solid solution structures:

    [SYMMETRY ALLOWED INTERNAL DEGREE(S) OF FREEDOM: 6
    TOTAL NUMBER OF PARTNERS = 2
    NUMBER OF THE FIRST COMPONENT = 2
    STAR VECTOR = 1
    IRREDUCIBLE REPRESENTATION = 1
    ERROR **** CLSEGV **** NOT PAIRING AT K = 7
    ----------------------------------------------------------------]

    The optimization starts as expected, but after reaching convergence criteria and going for FINALRUN calculations stops. Using obtained geometry for OPTGEOM restart or FREQCALC results in this error. All other 8 solid solutions were optimized smoothly.

    CrTaO4_SIC4_FREQ.out
    CrTaO4_SIC4.f34
    CrTaO4_SIC4.out


    I honestly don't know, because when I tried to use your .f34 with the input you provided the FREQCALC was starting without any issue.